About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5898308_5908417_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5898308 - 5908417
Intron Length:
10110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTGTTTACTT
Flanking Amino Acid:
TLYPEFMESVWWVFKQLYDK
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.3
0.75
0.9
74.4
40.4
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
53.8
0.2
2
74.65
43.4

Associated Gene:

Gene:
IARS1
Ensembl Gene ID:
ENSAPLG00000005750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006022
5822276 - 5912561
90286