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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5911335_5911801_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5911335 - 5911801
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCAATGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATG
Flanking Amino Acid:
FGWDCHGLPVEYEIDKTLGI
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.6
0.4
1
57.7
42.9
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
69.8
0.48
1.5
75.15
37.2

Associated Gene:

Gene:
IARS1
Ensembl Gene ID:
ENSAPLG00000005750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006022
5822276 - 5912561
90286