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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5968704_5969045_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5968704 - 5969045
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTTATT
Flanking Amino Acid:
PQFEGKAGEKLLNLQSRFGT
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.9
77.8
35.4
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
55.3
0.25
1.8
78.34
37.7

Associated Gene:

Gene:
NOL8
Ensembl Gene ID:
ENSAPLG00000005526
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005742
5961341 - 5975455
14115