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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5969163_5970038_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5969163 - 5970038
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTAACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTTGTTTAACA
Flanking Amino Acid:
DESLGNVHEKESDPKTSGRL
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
70.3
0.46
0.9
66.7
38.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
76.2
0.82
1.7
86.93
31.8

Associated Gene:

Gene:
NOL8
Ensembl Gene ID:
ENSAPLG00000005526
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005742
5961341 - 5975455
14115