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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5972728_5973586_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5972728 - 5973586
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATACTGAATT
Flanking Amino Acid:
VPGTEVPDHKNWVVGKFGRV
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
66.4
0.59
1.6
83.27
37.3

Associated Gene:

Gene:
NOL8
Ensembl Gene ID:
ENSAPLG00000005526
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005742
5961341 - 5975455
14115