Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5974102_5975063_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5974102 - 5975063

Intron Length:

962

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCTTCTTTCACA

Flanking Amino Acid:

ANISETDLKKCISILNKAKW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

89.1

24.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.7

0.76

0.7

78.7

26.9

Minor 5ss

41.7

-0.9

2.8

41.5

Minor BPS

62.9

0.4

1.8

70.26

42.8

Associated Gene:

Gene:

NOL8

Ensembl Gene ID:

ENSAPLG00000005526

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005742

5961341 - 5975455

14115