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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5991001_5996050_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5991001 - 5996050
Intron Length:
5050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGGACA
5'SS Class:
weak_major
3'SS Sequence:
TTTACTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATGGCAATAAAC
Flanking Amino Acid:
NAFSCLRTLPKEDTDILIFF
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
56.5
42.2
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
82.9
0.74
0.8
74.2
36.4
Minor 5ss
34.1
-1.8
3.5
49.9
46.2
Minor BPS
44.8
-0.4
2
56.47
41.3

Associated Gene:

Gene:
OGN
Ensembl Gene ID:
ENSAPLG00000005371
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005560
5990718 - 6004690
13973