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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5996204_5996779_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5996204 - 5996779
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTTAACA
Flanking Amino Acid:
PESLRILHLQYNNITTITDD
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
81
0.97
1.3
87.3
29.9

Associated Gene:

Gene:
OGN
Ensembl Gene ID:
ENSAPLG00000005371
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005560
5990718 - 6004690
13973