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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5997624_5998164_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5997624 - 5998164
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTCTTTTATG
Flanking Amino Acid:
RIAVSDFADITTLRRIDFSG
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
77.2
0.61
0.9
73
36.4
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
63.8
0.29
1.7
69.21
38.4

Associated Gene:

Gene:
OGN
Ensembl Gene ID:
ENSAPLG00000005371
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005560
5990718 - 6004690
13973