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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5998324_6000272_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5998324 - 6000272
Intron Length:
1949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAACTTTTAACT
Flanking Amino Acid:
ERSVKPTKDTNLPTCLLCVC
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.5
0.64
0.9
74.3
40.5
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
70.5
0.72
1.2
79.26
36.3

Associated Gene:

Gene:
OGN
Ensembl Gene ID:
ENSAPLG00000005371
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005560
5990718 - 6004690
13973