About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6000358_6004437_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6000358 - 6004437
Intron Length:
4080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCACACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
YEIQSKDIKKDATNVSLDTA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
79.8
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
56.4
0.15
1
56.3
31.8
Minor 5ss
46.5
-0.4
2.5
63.1
41.4
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
OGN
Ensembl Gene ID:
ENSAPLG00000005371
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005560
5990718 - 6004690
13973