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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6049240_6051600_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6049240 - 6051600
Intron Length:
2361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTTTGTTTACTT
Flanking Amino Acid:
SENTPREVLEVDYPDQENMK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
75.6
29.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
71.4
0.48
1
69
36
Minor 5ss
42.2
-0.9
3
55.5
48.7
Minor BPS
54.2
0.21
2
75.88
41.7

Associated Gene:

Gene:
ASPN
Ensembl Gene ID:
ENSAPLG00000005186
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005375
6038973 - 6051673
12701