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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6071214_6071967_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6071214 - 6071967
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGGA
5'SS Class:
major
3'SS Sequence:
CACAATATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTAATTAAAA
Flanking Amino Acid:
RFLRLNNNKIRTVPPERICR
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68
37.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
61.9
0.27
1
53.5
39.6
Minor 5ss
29.9
-2.3
3.3
39.3
45.9
Minor BPS
50.9
0.02
1.9
64.54
40.9

Associated Gene:

Gene:
ECM2
Ensembl Gene ID:
ENSAPLG00000005118
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005297
6071012 - 6087722
16711