Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6072295_6073830_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6072295 - 6073830

Intron Length:

1536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTAAG

5'SS Class:

major

3'SS Sequence:

TCCTTTGATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TCTCCTTTGATG

Flanking Amino Acid:

RIAPLAWINQENLESIDLSY

Intron Amino Acid Position:

535

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

71.6

40.1

Major BPS

0.85

0.9

39.9

Major PPT

77.1

0.61

0.9

72.7

36.6

Minor 5ss

36.3

-1.5

2.7

40.2

Minor BPS

62.6

0.25

1.3

63.36

39.3

Associated Gene:

Gene:

ECM2

Ensembl Gene ID:

ENSAPLG00000005118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005297

6071012 - 6087722

16711