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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6078318_6079615_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6078318 - 6079615
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAC
5'SS Class:
major
3'SS Sequence:
ATTATCTGGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATCT
Flanking Amino Acid:
GECCPVCSDTASSLDSNIIS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.1
35.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
66.7
0.38
1.1
66.3
44.5
Minor 5ss
36.5
-1.5
3.4
46
44.9
Minor BPS
65.4
0.56
1.9
85.15
41.2

Associated Gene:

Gene:
ECM2
Ensembl Gene ID:
ENSAPLG00000005118
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005297
6071012 - 6087722
16711