Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6079805_6083948_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6079805 - 6083948

Intron Length:

4144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTATTTATTT

Flanking Amino Acid:

GHESSYSVLPGKKGQCTANG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

84.5

0.78

0.7

29.5

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

57.5

0.31

1.8

76.23

41.2

Associated Gene:

Gene:

ECM2

Ensembl Gene ID:

ENSAPLG00000005118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005297

6071012 - 6087722

16711