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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6084269_6087642_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6084269 - 6087642
Intron Length:
3374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AGATATCTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.8
0.65
0.8
70.9
34.5
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
48.7
-0
1.8
66.01
38.3

Associated Gene:

Gene:
ECM2
Ensembl Gene ID:
ENSAPLG00000005118
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005297
6071012 - 6087722
16711