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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6118134_6119175_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6118134 - 6119175
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAT
U12 Branch Point Sequence:
AGATGTGCAATA
Flanking Amino Acid:
ISLSPCLQDECSEQRPVVLA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
61.8
0.29
1.1
58.3
39.2
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
38.7
-0.8
2.2
47.17
37

Associated Gene:

Gene:
IPPK
Ensembl Gene ID:
ENSAPLG00000004734
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004888
6117908 - 6121279
3372