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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6119256_6119771_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6119256 - 6119771
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CTATATTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTCTATATTG
Flanking Amino Acid:
DGTIAFALTKVQQYRIAMTA
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
80
0.75
1
78.6
31
Major PPT
70
0.45
1
65.7
40.4
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
50.1
-0.1
1.9
62.41
40.1

Associated Gene:

Gene:
IPPK
Ensembl Gene ID:
ENSAPLG00000004734
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004888
6117908 - 6121279
3372