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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6163512_6163599_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6163512 - 6163599
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
GTTCCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
GCCGCGGTGACG
Flanking Amino Acid:
FRECLQEALCERYKHHWFPL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
50.9
47.3
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
75.7
0.58
0.8
69.7
31
Minor 5ss
32.3
-2
3
39.4
45.9
Minor BPS
36.9
-1.1
2.5
38.23
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004696
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004824
6163125 - 6163967
843