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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6170117_6170768_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6170117 - 6170768
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAC
5'SS Class:
major
3'SS Sequence:
ATTCCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GTCTCTTGAATT
Flanking Amino Acid:
KEKEKEFSKKILSLQSELQF
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
75.2
34.3
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
81.7
0.71
0.8
78
30
Minor 5ss
38.5
-1.3
2.4
45.6
42.6
Minor BPS
66.1
0.58
1.4
77.3
39.6

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028250
6168063 - 6179739
11677
ENSAPLT00000026210
6168362 - 6179739
11378
ENSAPLT00000004599
6168063 - 6180607
12545
ENSAPLT00000038487
6168063 - 6179739
11677