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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6170885_6171210_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6170885 - 6171210
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
KHVTQTVLTPSPKKNSAIQV
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.4
0.66
0.9
78.4
33.9
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004599
6168063 - 6180607
12545
ENSAPLT00000038487
6168063 - 6179739
11677
ENSAPLT00000028250
6168063 - 6179739
11677
ENSAPLT00000026210
6168362 - 6179739
11378