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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6171369_6172898_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6171369 - 6172898
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCCC
5'SS Class:
major
3'SS Sequence:
CCGTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGAATTGTAATT
Flanking Amino Acid:
LFAQAASIKEDSKIPHPEVL
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
63.1
41.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.4
0.55
0.9
72.6
37.6
Minor 5ss
38.5
-1.3
3.1
51.7
45
Minor BPS
47.8
-0
2
65.44
39.6

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026210
6168362 - 6179739
11378
ENSAPLT00000004599
6168063 - 6180607
12545
ENSAPLT00000038487
6168063 - 6179739
11677
ENSAPLT00000028250
6168063 - 6179739
11677