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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6172995_6173788_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6172995 - 6173788
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
AATTATATATCT
Flanking Amino Acid:
YKSVHKRNTQGSILLNALMK
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
84.4
0.77
0.8
81.4
35.8
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
47.5
-0.1
2
69.79
40.6

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004599
6168063 - 6180607
12545
ENSAPLT00000038487
6168063 - 6179739
11677
ENSAPLT00000028250
6168063 - 6179739
11677
ENSAPLT00000026210
6168362 - 6179739
11378