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Intron Name: Anas_platyrhynchos_platyrhynchos_13_6173919_6175545_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6173919 - 6175545

Intron Length:

1627

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTTATGCGGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTCTTTTAATT

Flanking Amino Acid:

GAMLQSNLLDTKPTQIPSIR

Intron Amino Acid Position:

479

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.2

84.1

30.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

61.3

0.25

1.1

57.9

43.2

Minor 5ss

45.2

-0.5

2.8

57.4

40.7

Minor BPS

70.3

0.72

1.2

80.3

36.2

Associated Gene:

Gene:

ATRIP

Ensembl Gene ID:

ENSAPLG00000004472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038487

6168063 - 6179739

11677

ENSAPLT00000028250

6168063 - 6179739

11677

ENSAPLT00000026210

6168362 - 6179739

11378

ENSAPLT00000004599

6168063 - 6180607

12545