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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6176266_6176988_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6176266 - 6176988
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTCTAACT
Flanking Amino Acid:
AENSTVDLLINFQHLLSSQI
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
84.3
0.77
0.9
86.8
24.4
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
62
0.46
1.6
78.36
38.1

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038487
6168063 - 6179739
11677
ENSAPLT00000028250
6168063 - 6179739
11677
ENSAPLT00000026210
6168362 - 6179739
11378
ENSAPLT00000004599
6168063 - 6180607
12545