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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6177132_6177743_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6177132 - 6177743
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
ACAAAGTTATCT
Flanking Amino Acid:
MLVAQLCSHSDTCLLLALYM
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
84
0.76
0.8
81.2
30
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
41.4
-0.5
2.3
56.99
45

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028250
6168063 - 6179739
11677
ENSAPLT00000026210
6168362 - 6179739
11378
ENSAPLT00000004599
6168063 - 6180607
12545
ENSAPLT00000038487
6168063 - 6179739
11677