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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6177836_6178734_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6177836 - 6178734
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
GTTTTTGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTTTTTGTAATA
Flanking Amino Acid:
EVLWLQLEQETVRLLTKCTR
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
73.3
0.52
1
69.9
40.3
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
56.6
0.2
2
70.9
36

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004599
6168063 - 6180607
12545
ENSAPLT00000038487
6168063 - 6179739
11677
ENSAPLT00000026210
6168362 - 6179739
11378