Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6178819_6179076_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6178819 - 6179076

Intron Length:

258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTATCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

CTAATTTTATTT

Flanking Amino Acid:

PGTDCQCNPEVVKALIVMLH

Intron Amino Acid Position:

826

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

72.5

39.1

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

86.3

0.82

0.8

81.3

30.4

Minor 5ss

33.4

-1.9

3.1

43.8

43.9

Minor BPS

49.6

0.05

1.6

64.36

40.9

Associated Gene:

Gene:

ATRIP

Ensembl Gene ID:

ENSAPLG00000004472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004599

6168063 - 6180607

12545

ENSAPLT00000038487

6168063 - 6179739

11677

ENSAPLT00000026210

6168362 - 6179739

11378