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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6179327_6180539_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6179327 - 6180539
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCTCTAAAACA
Flanking Amino Acid:
KKNQKLSACEELMLDELYPP
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81.8
0.72
0.9
76.3
37.7
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
55.1
0.16
1.9
71.7
40.8

Associated Gene:

Gene:
ATRIP
Ensembl Gene ID:
ENSAPLG00000004472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004599
6168063 - 6180607
12545