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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6240238_6248760_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6240238 - 6248760
Intron Length:
8523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
CTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TTCTCCTCACCT
Flanking Amino Acid:
LLLDESQQFPDQPQEAVFSS
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
86
0.81
0.8
80.4
31.5
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
64.9
0.55
1.9
84.08
42.8

Associated Gene:

Gene:
RAD54L2
Ensembl Gene ID:
ENSAPLG00000002121
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002302
6240204 - 6266448
26245