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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6248960_6250587_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6248960 - 6250587
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAG
U12 Branch Point Sequence:
TAAGACGTATTT
Flanking Amino Acid:
QKPSHMRRNIRKLLREDQLE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
54
0.1
1.4
61.7
34.1
Major PPT
73.5
0.53
1
70
40.6
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
41
-0.6
2.3
58.7
44.4

Associated Gene:

Gene:
RAD54L2
Ensembl Gene ID:
ENSAPLG00000002121
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028759
6228939 - 6266448
37510
ENSAPLT00000002302
6240204 - 6266448
26245