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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6250728_6252865_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6250728 - 6252865
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GTCGTGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATGAATT
Flanking Amino Acid:
IPTVPLEFLPEDIVFRTAEA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.4
0.48
0.9
65.1
41.2
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
59.3
0.37
1.7
78.82
37

Associated Gene:

Gene:
RAD54L2
Ensembl Gene ID:
ENSAPLG00000002121
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002302
6240204 - 6266448
26245
ENSAPLT00000028759
6228939 - 6266448
37510