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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6254828_6255100_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6254828 - 6255100
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTAACTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CCGTCGCTAACT
Flanking Amino Acid:
EAKTVLAIVPVNTLQNWLAE
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.8
0.67
0.9
76.7
37
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
48
-0
2.4
67.97
48.6

Associated Gene:

Gene:
RAD54L2
Ensembl Gene ID:
ENSAPLG00000002121
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028759
6228939 - 6266448
37510
ENSAPLT00000002302
6240204 - 6266448
26245