About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6259702_6260001_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6259702 - 6260001
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTCTCCTGAACA
Flanking Amino Acid:
VKLGDKILVFSQSLSTLSVI
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
34.3
Major BPS
69.6
0.49
1
59.5
39
Major PPT
82.2
0.73
0.9
75.6
38.3
Minor 5ss
36.6
-1.5
3.3
49.2
47.3
Minor BPS
78.7
0.9
1.3
84.45
35.5

Associated Gene:

Gene:
RAD54L2
Ensembl Gene ID:
ENSAPLG00000002121
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028759
6228939 - 6266448
37510
ENSAPLT00000002302
6240204 - 6266448
26245