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Intron Name: Anas_platyrhynchos_platyrhynchos_13_6261228_6261563_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6261228 - 6261563

Intron Length:

336

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTAATTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTTCCTTTAATT

Flanking Amino Acid:

TSVWLFLLSTRAGCLGVNLI

Intron Amino Acid Position:

787

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

70.1

43.1

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

82.7

0.74

0.9

73.7

40.5

Minor 5ss

40.1

-1.1

2.8

50.1

46.1

Minor BPS

83.1

1.12

93.31

27.9

Associated Gene:

Gene:

RAD54L2

Ensembl Gene ID:

ENSAPLG00000002121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028759

6228939 - 6266448

37510

ENSAPLT00000002302

6240204 - 6266448

26245