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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6271098_6271166_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6271098 - 6271166
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGGA
5'SS Class:
major
3'SS Sequence:
TCCCGTGCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
GTGACCTGAATC
Flanking Amino Acid:
WRGEGSGLSEIRTGGHFAVL
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.3
40.6
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
62.4
0.28
1
54.3
40.3
Minor 5ss
22.1
-3.2
3.4
29
43.5
Minor BPS
59.6
0.28
1.5
65.1
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002626
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002688
6270574 - 6276525
5952