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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6272496_6272572_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6272496 - 6272572
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
CGTGTCGCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CCGGCGGTGACC
Flanking Amino Acid:
GRVPYPRPGMCPSETYDPLL
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.6
40
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
66
0.36
1
61.7
40
Minor 5ss
27.3
-2.6
3
30.8
36.9
Minor BPS
38.1
-0.9
2.5
44.25
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002626
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002688
6270574 - 6276525
5952