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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6274242_6274390_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6274242 - 6274390
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAACAA
U12 Branch Point Sequence:
CTGCCAACAACC
Flanking Amino Acid:
HCRLAGKDVETECANFIRLL
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
44.8
-0.3
1
46.9
34.5
Major PPT
66.4
0.37
1
64
36.7
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
43.4
-0.5
2
54.65
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002626
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002688
6270574 - 6276525
5952