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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6274454_6274597_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6274454 - 6274597
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTGCT
5'SS Class:
major
3'SS Sequence:
GCTTCTGTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAACAC
U12 Branch Point Sequence:
GCTTCTGTCGCA
Flanking Amino Acid:
LDHPGREPEKIFWPASREQV
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
71.9
36.2
Major BPS
46.4
-0.2
1
50.7
32.2
Major PPT
74.2
0.55
0.9
68.4
37.3
Minor 5ss
29.3
-2.4
3.3
41.8
44.9
Minor BPS
33.8
-1.2
3.7
55.17
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002626
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002688
6270574 - 6276525
5952