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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6288667_6290905_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6288667 - 6290905
Intron Length:
2239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
AAATCACTAATC
Flanking Amino Acid:
NQQGTASPMEVENRKKGPGL
Intron Amino Acid Position:
1221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
81.7
0.71
0.9
72.8
42.2
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
49.4
-0
1.9
61.49
36.9

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029019
6288383 - 6337817
49435
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435