Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6291018_6292303_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6291018 - 6292303

Intron Length:

1286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGTCT

5'SS Class:

strong_major

3'SS Sequence:

GTCTCTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

GTACAATTGATT

Flanking Amino Acid:

KRLRYDRDSESDYDPRIDSN

Intron Amino Acid Position:

1183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

35.5

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

84.5

0.78

0.8

76.4

37.7

Minor 5ss

39.4

-1.2

3.3

57.2

Minor BPS

47.3

-0.1

1.8

64.76

Associated Gene:

Gene:

RBM6

Ensembl Gene ID:

ENSAPLG00000003536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046469

6288383 - 6337817

49435

ENSAPLT00000029019

6288383 - 6337817

49435

ENSAPLT00000003686

6288383 - 6337817

49435