Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6292842_6292992_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6292842 - 6292992

Intron Length:

151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTGGACTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TGCATTTGGACT

Flanking Amino Acid:

LAYLEKREREIVA*

Intron Amino Acid Position:

1186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.8

43.8

Major BPS

77.8

0.69

78.2

31.8

Major PPT

72.8

0.51

0.9

63.3

43.1

Minor 5ss

-2.2

3.2

46.1

Minor BPS

48.9

-0

1.5

64.49

40.1

Associated Gene:

Gene:

RBM6

Ensembl Gene ID:

ENSAPLG00000003536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033819

6292487 - 6337817

45331