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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6293068_6293638_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6293068 - 6293638
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTCTGCTGACTC
Flanking Amino Acid:
KHQQLSNLHKQNLEIHMKIK
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
87.9
0.85
0.7
80.5
31.6
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
44.4
-0.4
2.1
54.19
44.5

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033819
6292487 - 6337817
45331
ENSAPLT00000029019
6288383 - 6337817
49435
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435