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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6293903_6294144_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6293903 - 6294144
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TGTGCGACAACC
Flanking Amino Acid:
SVKKDESAAPPKVVNPLIGL
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
67.2
39.4
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
78.8
0.65
0.7
76.6
25.5
Minor 5ss
38.8
-1.3
3.1
51.6
45.1
Minor BPS
42.9
-0.5
2.4
60.45
44.3

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435
ENSAPLT00000033819
6292487 - 6337817
45331
ENSAPLT00000029019
6288383 - 6337817
49435