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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6295791_6296213_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6295791 - 6296213
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
CCAAACATCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
CTTCCCTAACCA
Flanking Amino Acid:
KEKGKNTSAKTDRKMKQAVQ
Intron Amino Acid Position:
1013

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
58.9
0.2
1
50
37.4
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
52.8
0.08
2
68.36
44.1

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037795
6295320 - 6337817
42498