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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6300293_6300819_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6300293 - 6300819
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ACCTCTCTCATT
Flanking Amino Acid:
ATPQEGGGSRTIMLKRITRF
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.5
0.73
0.8
80.8
31.1
Minor 5ss
32.3
-2
2.7
37.1
33.8
Minor BPS
46.1
-0.2
2
62
43

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029019
6288383 - 6337817
49435
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435
ENSAPLT00000037795
6295320 - 6337817
42498
ENSAPLT00000033819
6292487 - 6337817
45331