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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6302087_6303183_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6302087 - 6303183
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGGATTTTAACA
Flanking Amino Acid:
SCSYCKLPRDGSRAGPESRG
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.2
37.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.6
0.64
0.8
71.7
32.9
Minor 5ss
30.7
-2.2
2.5
31.8
35.8
Minor BPS
64.9
0.46
1.3
68.16
38.3

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033819
6292487 - 6337817
45331
ENSAPLT00000029019
6288383 - 6337817
49435
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435
ENSAPLT00000037795
6295320 - 6337817
42498