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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6303245_6304445_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6303245 - 6304445
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTCCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCATCTTCCATT
Flanking Amino Acid:
PCPEFWRCKRCKVCTVGYRS
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.8
77.8
29.3
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
46.2
-0.2
1.9
60.07
44.3

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029019
6288383 - 6337817
49435
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435
ENSAPLT00000037795
6295320 - 6337817
42498
ENSAPLT00000033819
6292487 - 6337817
45331