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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6304521_6321124_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6304521 - 6321124
Intron Length:
16604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGCTTTA
5'SS Class:
weak_major
3'SS Sequence:
CTTGTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTCAT
U12 Branch Point Sequence:
CTTGTCTCAACA
Flanking Amino Acid:
EAIGCMEANQGTLSIGGKEV
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.4
67.1
41
Major BPS
72.2
0.55
1.2
73.6
41.8
Major PPT
74.7
0.56
0.9
69.9
35.4
Minor 5ss
44.3
-0.6
2.9
58.8
45.7
Minor BPS
60.6
0.33
1.7
70.77
41.8

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435
ENSAPLT00000037795
6295320 - 6337817
42498
ENSAPLT00000033819
6292487 - 6337817
45331
ENSAPLT00000029019
6288383 - 6337817
49435